Papers and Software Projects

• Clinical Concept Value Sets and Interoperability in Health Data Analytics. Gold, S., Batch, A., McClure, R., Jiang, G., Kharrazi, H., Saripalle, R., Huser, V., Weng, C., Roderer, N., Szarfman, A., Elmqvist, N., Gotz, D. AMIA Annual Symposium proceedings, 2018, 480-489. On PubMed Central
• OHDSI / ATLAS Patient Profile Visualization — Interactive display of patient medical history for observational research. — Demo — OHDSI — ATLAS Contributions on GitHub
• OHDSI / Drug Exposure Gap Explorer — Proof of concept for interactive analysis of drug exposure periods and gaps — Demo — Code
• Supergroup — Adds extreme convenience and understandability to the manipulation of Javascript data collections, especially in the context of D3.js visualization programming. — Documentation — Blog article — Source code on GitHub
• MERKI Medication Parser — PubMed full-text — Distinguished Paper Award. — Source code on GitHub
• DQ CDM Visual Exploration Platform — Experimental browser for aggregate data quality datasets conforming to the Data Quality Collaborative Common Data Model. Code produced for the DQ Code-a-Thon in November, 2015. The following demos won't make a lot of sense if you don't understand the DQ CDM and it's goals, but here they are for the curious: video, live, wiki
• TreeLike arbitrary CSV visualization in D3.js — Documentation — Source code on GitHub
• LifeFlow and event visualization in D3.js — (very incomplete) — LifeFlow demo — Source code on GitHub
• Black Hat Presentation
• EventFlow — Visual Analysis of Temporal Event Sequences and Advanced Strategies for Healthcare Discovery. Collaboration with University of Maryland Human Computer Interaction Lab, Ben Shneiderman, Catherine Plaisant, Megan Monroe, Krist Wongsuphasawat, and Jeff Millstein — Paper — Case Study